J3_6OKK_001

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AG*CGUAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OKK_001 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.1054

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6OKK|1|A|A|41
6OKK|1|A|G|42
*
6OKK|1|A|C|439
6OKK|1|A|G|440
6OKK|1|A|U|441
6OKK|1|A|A|442
6OKK|1|A|A|443
6OKK|1|A|A|444
6OKK|1|A|U|445
*
6OKK|1|A|A|470
6OKK|1|A|G|471
6OKK|1|A|U|472

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S9

Chain Q

40S ribosomal protein S23