J3_6OKK_010
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUUAG*CGAGAUC*GGCAACA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OKK_010 not in the Motif Atlas
- Geometric match to J3_5J7L_008
- Geometric discrepancy: 0.2944
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6OKK|1|A|U|1384
6OKK|1|A|U|1385
6OKK|1|A|U|1386
6OKK|1|A|U|1387
6OKK|1|A|A|1388
6OKK|1|A|G|1389
*
6OKK|1|A|C|1429
6OKK|1|A|G|1430
6OKK|1|A|A|1431
6OKK|1|A|G|1432
6OKK|1|A|A|1433
6OKK|1|A|U|1434
6OKK|1|A|C|1435
*
6OKK|1|A|G|1664
6OKK|1|A|G|1665
6OKK|1|A|C|1666
6OKK|1|A|A|1667
6OKK|1|A|A|1668
6OKK|1|A|C|1669
6OKK|1|A|A|1670
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain G
- 40S ribosomal protein S5
- Chain M
- 40S ribosomal protein S16
- Chain N
- 40S ribosomal protein S20e
- Chain T
- 40S ribosomal protein S29
- Chain W
- 40S ribosomal protein S17
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