J3_6OKK_011
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OKK_011 not in the Motif Atlas
- Homologous match to J3_8C3A_085
- Geometric discrepancy: 0.1197
- The information below is about J3_8C3A_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.2
- Basepair signature
- cWW-F-F-F-F-tSS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6OKK|1|A|U|1394
6OKK|1|A|G|1395
*
6OKK|1|A|U|1405
6OKK|1|A|G|1406
6OKK|1|A|U|1407
6OKK|1|A|C|1408
*
6OKK|1|A|G|1420
6OKK|1|A|A|1421
6OKK|1|A|U|1422
6OKK|1|A|A|1423
6OKK|1|A|A|1424
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein SA
- Chain G
- 40S ribosomal protein S5
- Chain W
- 40S ribosomal protein S17
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