J3_6OKK_012
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AAC*GAAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 6OKK|1|A|U|1659, 6OKK|1|A|U|1660
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OKK_012 not in the Motif Atlas
- Geometric match to J3_4V88_040
- Geometric discrepancy: 0.2475
- The information below is about J3_4V88_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.2
- Basepair signature
- cWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6OKK|1|A|A|1438
6OKK|1|A|A|1439
6OKK|1|A|C|1440
*
6OKK|1|A|G|1632
6OKK|1|A|A|1633
6OKK|1|A|A|1634
6OKK|1|A|C|1635
*
6OKK|1|A|G|1658
6OKK|1|A|U|1659
6OKK|1|A|U|1660
6OKK|1|A|U|1661
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S5
- Chain M
- 40S ribosomal protein S16
- Chain N
- 40S ribosomal protein S20e
- Chain T
- 40S ribosomal protein S29
- Chain W
- 40S ribosomal protein S17
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