J3_6OKK_013
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 6OKK|1|A|U|1719, 6OKK|1|A|G|1836
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OKK_013 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.1722
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6OKK|1|A|C|1716
6OKK|1|A|A|1717
6OKK|1|A|C|1718
6OKK|1|A|U|1719
6OKK|1|A|G|1720
*
6OKK|1|A|C|1830
6OKK|1|A|G|1831
6OKK|1|A|U|1832
6OKK|1|A|G|1833
6OKK|1|A|A|1834
6OKK|1|A|U|1835
6OKK|1|A|G|1836
6OKK|1|A|G|1837
*
6OKK|1|A|C|1868
6OKK|1|A|G|1869
6OKK|1|A|A|1870
6OKK|1|A|G|1871
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S5
- Chain S
- 40S ribosomal protein S18
- Chain Y
- 40S ribosomal protein S19
- Chain b
- 40S ribosomal protein S25
- Chain g
- Transfer RNA; tRNA
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