J3_6OKK_015
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAUUAAG*CGCGUAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 6OKK|1|A|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OKK_015 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0869
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.2
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6OKK|1|A|A|41
6OKK|1|A|G|42
6OKK|1|A|A|43
6OKK|1|A|U|44
6OKK|1|A|U|45
6OKK|1|A|A|46
6OKK|1|A|A|47
6OKK|1|A|G|48
*
6OKK|1|A|C|437
6OKK|1|A|G|438
6OKK|1|A|C|439
6OKK|1|A|G|440
6OKK|1|A|U|441
6OKK|1|A|A|442
6OKK|1|A|A|443
6OKK|1|A|A|444
6OKK|1|A|U|445
*
6OKK|1|A|A|470
6OKK|1|A|G|471
6OKK|1|A|U|472
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S9
- Chain Q
- 40S ribosomal protein S23
Coloring options: