J3_6OLE_029
3D structure
- PDB id
- 6OLE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 6OLE|1|t|C|4085, 6OLE|1|t|U|4086, 6OLE|1|t|U|4087, 6OLE|1|t|C|4088, 6OLE|1|t|U|4089, 6OLE|1|t|G|4090
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OLE_029 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.3671
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6OLE|1|t|G|4061
6OLE|1|t|G|4062
6OLE|1|t|G|4063
6OLE|1|t|G|4064
*
6OLE|1|t|C|4083
6OLE|1|t|G|4084
6OLE|1|t|C|4085
6OLE|1|t|U|4086
6OLE|1|t|U|4087
6OLE|1|t|C|4088
6OLE|1|t|U|4089
6OLE|1|t|G|4090
6OLE|1|t|G|4091
6OLE|1|t|C|4092
6OLE|1|t|G|4093
6OLE|1|t|C|4094
6OLE|1|t|C|4095
6OLE|1|t|A|4096
6OLE|1|t|A|4097
6OLE|1|t|G|4098
*
6OLE|1|t|C|4117
6OLE|1|t|G|4118
6OLE|1|t|A|4119
6OLE|1|t|C|4120
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain I
- 60S ribosomal protein L7a
- Chain SB
- 40S ribosomal protein S3a
- Chain Y
- 60S ribosomal protein L23a
- Chain a
- 60S ribosomal protein L27
- Chain d
- 60S ribosomal protein L30
- Chain h
- 60S ribosomal protein L34
- Chain q
- 60S ribosomal protein L37a
Coloring options: