J3_6OLE_034
3D structure
- PDB id
- 6OLE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCG*CGAUAGUCAACAAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6OLE|1|D|C|23, 6OLE|1|t|U|348, 6OLE|1|t|A|356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OLE_034 not in the Motif Atlas
- Geometric match to J3_5TBW_061
- Geometric discrepancy: 0.0671
- The information below is about J3_5TBW_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
6OLE|1|D|C|21
6OLE|1|D|U|22
6OLE|1|D|C|23
6OLE|1|D|G|24
*
6OLE|1|t|C|345
6OLE|1|t|G|346
6OLE|1|t|A|347
6OLE|1|t|U|348
6OLE|1|t|A|349
6OLE|1|t|G|350
6OLE|1|t|U|351
6OLE|1|t|C|352
6OLE|1|t|A|353
6OLE|1|t|A|354
6OLE|1|t|C|355
6OLE|1|t|A|356
6OLE|1|t|A|357
6OLE|1|t|G|358
6OLE|1|t|U|359
6OLE|1|t|A|360
6OLE|1|t|C|361
*
6OLE|1|t|G|368
6OLE|1|t|G|369
6OLE|1|t|A|370
6OLE|1|t|A|371
6OLE|1|t|A|372
6OLE|1|t|G|373
Current chains
- Chain D
- 5.8S ribosomal RNA
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain Z
- 60S ribosomal protein L26
- Chain k
- 60S ribosomal protein L37
- Chain m
- 60S ribosomal protein L39
- Chain y
- Cadherin-1
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