Loop J3_6OLE

3D structure

PDB id: 6OLE (explore in PDB, NAKB, or RNA 3D Hub)
Description: Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: GGGCCCAAGUCC*GAGGCCCAGCC*GGACGGUGUGAGGCCGGUAGCGGC
Length: 47 nucleotides
Bulged bases: 6OLE|1|t|C|212, 6OLE|1|t|C|213, 6OLE|1|t|U|228, 6OLE|1|t|G|241
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6OLE|1|t|G|188
6OLE|1|t|G|189
6OLE|1|t|G|190
6OLE|1|t|C|191
6OLE|1|t|C|192
6OLE|1|t|C|193
6OLE|1|t|A|194
6OLE|1|t|A|195
6OLE|1|t|G|196
6OLE|1|t|U|197
6OLE|1|t|C|198
6OLE|1|t|C|199
*
6OLE|1|t|G|208
6OLE|1|t|A|209
6OLE|1|t|G|210
6OLE|1|t|G|211
6OLE|1|t|C|212
6OLE|1|t|C|213
6OLE|1|t|C|214
6OLE|1|t|A|215
6OLE|1|t|G|216
6OLE|1|t|C|217
6OLE|1|t|C|218
*
6OLE|1|t|G|222
6OLE|1|t|G|223
6OLE|1|t|A|224
6OLE|1|t|C|225
6OLE|1|t|G|226
6OLE|1|t|G|227
6OLE|1|t|U|228
6OLE|1|t|G|229
6OLE|1|t|U|230
6OLE|1|t|G|231
6OLE|1|t|A|232
6OLE|1|t|G|233
6OLE|1|t|G|234
6OLE|1|t|C|235
6OLE|1|t|C|236
6OLE|1|t|G|237
6OLE|1|t|G|238
6OLE|1|t|U|239
6OLE|1|t|A|240
6OLE|1|t|G|241
6OLE|1|t|C|242
6OLE|1|t|G|243
6OLE|1|t|G|244
6OLE|1|t|C|245

Current chains

Chain t: 28S ribosomal RNA

Nearby chains

Chain C: 60S ribosomal protein L4
Chain D: 5.8S ribosomal RNA; 5.8S rRNA
Chain Z: 60S ribosomal protein L26
Chain f: 60S ribosomal protein L32
Chain k: 60S ribosomal protein L37

J3_6OLE_038