3D structure

PDB id
6OLF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUUAAU(PSU)U*GGGAAACCUCAC*GGCUG
Length
25 nucleotides
Bulged bases
6OLF|1|S2|G|1256, 6OLF|1|S2|A|1258, 6OLF|1|S2|A|1260, 6OLF|1|S2|U|1519
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OLF_011 not in the Motif Atlas
Homologous match to J3_8C3A_040
Geometric discrepancy: 0.2048
The information below is about J3_8C3A_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.3
Basepair signature
cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

6OLF|1|S2|C|1237
6OLF|1|S2|U|1238
6OLF|1|S2|U|1239
6OLF|1|S2|A|1240
6OLF|1|S2|A|1241
6OLF|1|S2|U|1242
6OLF|1|S2|PSU|1243
6OLF|1|S2|U|1244
*
6OLF|1|S2|G|1255
6OLF|1|S2|G|1256
6OLF|1|S2|G|1257
6OLF|1|S2|A|1258
6OLF|1|S2|A|1259
6OLF|1|S2|A|1260
6OLF|1|S2|C|1261
6OLF|1|S2|C|1262
6OLF|1|S2|U|1263
6OLF|1|S2|C|1264
6OLF|1|S2|A|1265
6OLF|1|S2|C|1266
*
6OLF|1|S2|G|1516
6OLF|1|S2|G|1517
6OLF|1|S2|C|1518
6OLF|1|S2|U|1519
6OLF|1|S2|G|1520

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SP
40S ribosomal protein S15
Chain SS
40S ribosomal protein S18
Chain SU
40S ribosomal protein S20
Chain Sd
40S ribosomal protein S29

Coloring options:


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