J3_6OLF_035

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAGU*GCAG*CUGGAU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLF|1|S2|A|816
6OLF|1|S2|G|817
6OLF|1|S2|A|818
6OLF|1|S2|G|819
6OLF|1|S2|U|820
*
6OLF|1|S2|G|828
6OLF|1|S2|C|829
6OLF|1|S2|A|830
6OLF|1|S2|G|831
*
6OLF|1|S2|C|843
6OLF|1|S2|U|844
6OLF|1|S2|G|845
6OLF|1|S2|G|846
6OLF|1|S2|A|847
6OLF|1|S2|U|848

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24