J3_6OLF_043

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAUGG*CGUUCCGAAGGG*CGGCCGAU

Length

26 nucleotides

Bulged bases

6OLF|1|t|C|2449, 6OLF|1|t|A|2451, 6OLF|1|t|G|2454, 6OLF|1|t|G|2482, 6OLF|1|t|C|2484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLF_043 not in the Motif Atlas

Homologous match to J3_8CRE_016

Geometric discrepancy: 0.5927

The information below is about J3_8CRE_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65403.1

Basepair signature

cWW-tSH-tHW-F-F-F-tHS-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6OLF|1|t|A|2430
6OLF|1|t|G|2431
6OLF|1|t|A|2432
6OLF|1|t|U|2433
6OLF|1|t|G|2434
6OLF|1|t|G|2435
*
6OLF|1|t|C|2444
6OLF|1|t|G|2445
6OLF|1|t|U|2446
6OLF|1|t|U|2447
6OLF|1|t|C|2448
6OLF|1|t|C|2449
6OLF|1|t|G|2450
6OLF|1|t|A|2451
6OLF|1|t|A|2452
6OLF|1|t|G|2453
6OLF|1|t|G|2454
6OLF|1|t|G|2455
*
6OLF|1|t|C|2480
6OLF|1|t|G|2481
6OLF|1|t|G|2482
6OLF|1|t|C|2483
6OLF|1|t|C|2484
6OLF|1|t|G|2485
6OLF|1|t|A|2486
6OLF|1|t|U|2487

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain D

5.8S ribosomal RNA; 5.8S rRNA

Chain I

60S ribosomal protein L7a

Chain O

60S ribosomal protein L15

Chain Y

60S ribosomal protein L23a

Chain k

60S ribosomal protein L37