J3_6OLG_007

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLG_007 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2514

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6OLG|1|A2|G|1950
6OLG|1|A2|A|1951
6OLG|1|A2|C|1952
*
6OLG|1|A2|G|1976
6OLG|1|A2|C|1977
6OLG|1|A2|U|1978
6OLG|1|A2|A|1979
6OLG|1|A2|A|1980
6OLG|1|A2|G|1981
6OLG|1|A2|G|1982
*
6OLG|1|A2|C|1997
6OLG|1|A2|A|1998
6OLG|1|A2|C|1999

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AK

60S acidic ribosomal protein P0

Chain Aq

60S ribosomal protein L12