J3_6OLG_030

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLG_030 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1742

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6OLG|1|B1|U|1350
6OLG|1|B1|G|1351
*
6OLG|1|B1|U|1360
6OLG|1|B1|G|1361
6OLG|1|B1|U|1362
6OLG|1|B1|C|1363
*
6OLG|1|B1|G|1375
6OLG|1|B1|A|1376
6OLG|1|B1|U|1377
6OLG|1|B1|A|1378
6OLG|1|B1|A|1379

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BA

40S ribosomal protein SA

Chain BC

40S ribosomal protein S2

Chain BR

40S ribosomal protein S17