J3_6OLG_039

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLG_039 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.1833

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6OLG|1|A2|A|2577
6OLG|1|A2|G|2578
6OLG|1|A2|A|2579
6OLG|1|A2|A|2580
6OLG|1|A2|G|2581
*
6OLG|1|A2|C|2716
6OLG|1|A2|C|2717
*
6OLG|1|A2|G|2721
6OLG|1|A2|A|2722
6OLG|1|A2|A|2723
6OLG|1|A2|A|2724
6OLG|1|A2|A|2725
6OLG|1|A2|U|2726

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain Ag

60S ribosomal protein L34

Chain Ap

60S ribosomal protein L37a