J3_6OLI_001
3D structure
- PDB id
- 6OLI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CA*UUGAAAAG*CG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OLI_001 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.1301
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
6OLI|1|D|C|19
6OLI|1|D|A|20
*
6OLI|1|t|U|374
6OLI|1|t|U|375
6OLI|1|t|G|376
6OLI|1|t|A|377
6OLI|1|t|A|378
6OLI|1|t|A|379
6OLI|1|t|A|380
6OLI|1|t|G|381
*
6OLI|1|t|C|408
6OLI|1|t|G|409
Current chains
- Chain D
- 5.8S ribosomal RNA
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain Z
- 60S ribosomal protein L26
- Chain m
- 60S ribosomal protein L39
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