J3_6OLI_028

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLI_028 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1541

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6OLI|1|t|C|3908
6OLI|1|t|G|3909
6OLI|1|t|G|3910
*
6OLI|1|t|C|4044
6OLI|1|t|U|4045
6OLI|1|t|G|4046
6OLI|1|t|A|4047
6OLI|1|t|C|4048
*
6OLI|1|t|G|4130
6OLI|1|t|G|4131
6OLI|1|t|A|4132
6OLI|1|t|C|4133
6OLI|1|t|A|4134
6OLI|1|t|G|4135

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain I

60S ribosomal protein L7a

Chain O

60S ribosomal protein L15

Chain j

60S ribosomal protein L36