J3_6OLI_031

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

6OLI|1|t|A|4426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLI_031 not in the Motif Atlas

Homologous match to J3_8P9A_063

Geometric discrepancy: 0.1043

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6OLI|1|t|U|4425
6OLI|1|t|A|4426
6OLI|1|t|U|4427
6OLI|1|t|C|4428
*
6OLI|1|t|G|4453
6OLI|1|t|U|4454
6OLI|1|t|U|4455
*
6OLI|1|t|A|4469
6OLI|1|t|C|4470
6OLI|1|t|U|4471
6OLI|1|t|A|4472
6OLI|1|t|A|4473
6OLI|1|t|U|4474
6OLI|1|t|A|4475

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain W

60S ribosomal protein L23