J3_6OLI_033
3D structure
- PDB id
- 6OLI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CA*UUGAAAAGAAC*GAGUUCAAGAGGGCG
- Length
- 28 nucleotides
- Bulged bases
- 6OLI|1|t|G|403, 6OLI|1|t|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OLI_033 not in the Motif Atlas
- Geometric match to J3_5TBW_062
- Geometric discrepancy: 0.1113
- The information below is about J3_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6OLI|1|D|C|19
6OLI|1|D|A|20
*
6OLI|1|t|U|374
6OLI|1|t|U|375
6OLI|1|t|G|376
6OLI|1|t|A|377
6OLI|1|t|A|378
6OLI|1|t|A|379
6OLI|1|t|A|380
6OLI|1|t|G|381
6OLI|1|t|A|382
6OLI|1|t|A|383
6OLI|1|t|C|384
*
6OLI|1|t|G|395
6OLI|1|t|A|396
6OLI|1|t|G|397
6OLI|1|t|U|398
6OLI|1|t|U|399
6OLI|1|t|C|400
6OLI|1|t|A|401
6OLI|1|t|A|402
6OLI|1|t|G|403
6OLI|1|t|A|404
6OLI|1|t|G|405
6OLI|1|t|G|406
6OLI|1|t|G|407
6OLI|1|t|C|408
6OLI|1|t|G|409
Current chains
- Chain D
- 5.8S ribosomal RNA
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain Q
- 60S ribosomal protein L17
- Chain Z
- 60S ribosomal protein L26
- Chain m
- 60S ribosomal protein L39
- Chain y
- Nascent chain
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