J3_6OLI_048

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLI_048 not in the Motif Atlas

Homologous match to J3_8CRE_012

Geometric discrepancy: 0.3868

The information below is about J3_8CRE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6OLI|1|t|G|1950
6OLI|1|t|A|1951
6OLI|1|t|C|1952
*
6OLI|1|t|G|1976
6OLI|1|t|C|1977
6OLI|1|t|U|1978
6OLI|1|t|A|1979
6OLI|1|t|A|1980
6OLI|1|t|G|1981
6OLI|1|t|G|1982
*
6OLI|1|t|C|1997
6OLI|1|t|A|1998
6OLI|1|t|C|1999

Current chains

Chain t

28S ribosomal RNA

Nearby chains