J3_6OLZ_008

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLZ_008 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.3606

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6OLZ|1|A2|G|1950
6OLZ|1|A2|A|1951
6OLZ|1|A2|C|1952
*
6OLZ|1|A2|G|1976
6OLZ|1|A2|C|1977
6OLZ|1|A2|U|1978
6OLZ|1|A2|A|1979
6OLZ|1|A2|A|1980
6OLZ|1|A2|G|1981
6OLZ|1|A2|G|1982
*
6OLZ|1|A2|C|1997
6OLZ|1|A2|A|1998
6OLZ|1|A2|C|1999

Current chains

Chain A2

28S ribosomal RNA

Nearby chains