J3_6OLZ_013

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLZ_013 not in the Motif Atlas

Geometric match to J3_5TBW_090

Geometric discrepancy: 0.2407

The information below is about J3_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6OLZ|1|A2|U|2554
6OLZ|1|A2|G|2555
*
6OLZ|1|A2|C|2564
6OLZ|1|A2|G|2565
6OLZ|1|A2|A|2566
6OLZ|1|A2|C|2567
6OLZ|1|A2|C|2568
*
6OLZ|1|A2|G|2735
6OLZ|1|A2|A|2736

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AZ

60S ribosomal protein L27

Chain Ag

60S ribosomal protein L34