Motif J3_16991.1 Version J3_16991.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | break | 8 | 9 | 1-9 | 2-4 | 5-6 | 7-8 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_4WFL_002 | 4WFL | 0.7021 | 0 | A | LSRP RNA | U | 34 | G | 35 | U | 36 | A | 37 | C | 38 | * | G | 58 | G | 59 | * | C | 15 | G | 16 | cWW | ntSH | cWW | cWW |
2 | J3_5TBW_090 | 5TBW | 0.0000 | 0 | 1 | LSU rRNA | U | 1641 | A | 1642 | A | 1643 | C | 1644 | U | 1645 | * | A | 1810 | G | 1811 | * | C | 1631 | A | 1632 | ncWW | cWW | cWW | |
3 | J3_8C3A_054 | 8C3A | 0.1703 | 0 | 1 | LSU rRNA | U | 1637 | A | 1638 | A | 1639 | C | 1640 | U | 1641 | * | A | 1806 | G | 1807 | * | C | 1627 | A | 1628 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CA*UAACU*AG | 2 |
CG*UGUAC*GG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
*AAC* | 2 |
*GUA* | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-cWW-F-F-cWW
- Heat map statistics
- Min 0.17 | Avg 0.35 | Max 0.72
Coloring options: