J3_6OM0_024
3D structure
- PDB id
- 6OM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OM0_024 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1639
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6OM0|1|t|U|2419
6OM0|1|t|C|2420
6OM0|1|t|G|2421
6OM0|1|t|G|2422
6OM0|1|t|U|2423
6OM0|1|t|C|2424
*
6OM0|1|t|G|2494
6OM0|1|t|G|2495
6OM0|1|t|A|2496
6OM0|1|t|G|2497
6OM0|1|t|U|2498
*
6OM0|1|t|A|2515
6OM0|1|t|A|2516
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain D
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Y
- 60S ribosomal protein L23a
- Chain h
- 60S ribosomal protein L34
- Chain l
- 60S ribosomal protein L38
- Chain m
- 60S ribosomal protein L39
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