J3_6OM0_032

3D structure

PDB id

6OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CA*UUGAAAAGAAC*GAGUUCAAGAGGGCG

Length

28 nucleotides

Bulged bases

6OM0|1|t|G|403, 6OM0|1|t|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OM0_032 not in the Motif Atlas

Geometric match to J3_5TBW_062

Geometric discrepancy: 0.0953

The information below is about J3_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91149.1

Basepair signature

cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6OM0|1|D|C|19
6OM0|1|D|A|20
*
6OM0|1|t|U|374
6OM0|1|t|U|375
6OM0|1|t|G|376
6OM0|1|t|A|377
6OM0|1|t|A|378
6OM0|1|t|A|379
6OM0|1|t|A|380
6OM0|1|t|G|381
6OM0|1|t|A|382
6OM0|1|t|A|383
6OM0|1|t|C|384
*
6OM0|1|t|G|395
6OM0|1|t|A|396
6OM0|1|t|G|397
6OM0|1|t|U|398
6OM0|1|t|U|399
6OM0|1|t|C|400
6OM0|1|t|A|401
6OM0|1|t|A|402
6OM0|1|t|G|403
6OM0|1|t|A|404
6OM0|1|t|G|405
6OM0|1|t|G|406
6OM0|1|t|G|407
6OM0|1|t|C|408
6OM0|1|t|G|409

Current chains

Chain D

5.8S ribosomal RNA

Chain t

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Q

60S ribosomal protein L17

Chain Z

60S ribosomal protein L26

Chain m

60S ribosomal protein L39

Chain y

Proprotein convertase subtilisin/kexin type 9