J3_6OM0_043
3D structure
- PDB id
- 6OM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 6OM0|1|t|C|2449, 6OM0|1|t|A|2451, 6OM0|1|t|G|2454
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OM0_043 not in the Motif Atlas
- Homologous match to J3_8C3A_053
- Geometric discrepancy: 0.5864
- The information below is about J3_8C3A_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34234.1
- Basepair signature
- cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6OM0|1|t|A|2430
6OM0|1|t|G|2431
6OM0|1|t|A|2432
6OM0|1|t|U|2433
6OM0|1|t|G|2434
6OM0|1|t|G|2435
*
6OM0|1|t|C|2444
6OM0|1|t|G|2445
6OM0|1|t|U|2446
6OM0|1|t|U|2447
6OM0|1|t|C|2448
6OM0|1|t|C|2449
6OM0|1|t|G|2450
6OM0|1|t|A|2451
6OM0|1|t|A|2452
6OM0|1|t|G|2453
6OM0|1|t|G|2454
6OM0|1|t|G|2455
*
6OM0|1|t|C|2480
6OM0|1|t|G|2481
6OM0|1|t|G|2482
6OM0|1|t|C|2483
6OM0|1|t|C|2484
6OM0|1|t|G|2485
6OM0|1|t|A|2486
6OM0|1|t|U|2487
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain D
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain I
- 60S ribosomal protein L7a
- Chain O
- 60S ribosomal protein L15
- Chain Y
- 60S ribosomal protein L23a
- Chain k
- 60S ribosomal protein L37
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