J3_6OM6_007

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6OM6|1|1|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OM6_007 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1057

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

6OM6|1|1|C|1306
6OM6|1|1|A|1307
6OM6|1|1|A|1308
6OM6|1|1|G|1309
*
6OM6|1|1|C|1605
6OM6|1|1|C|1606
6OM6|1|1|C|1607
6OM6|1|1|A|1608
6OM6|1|1|A|1609
6OM6|1|1|A|1610
6OM6|1|1|C|1611
*
6OM6|1|1|G|1620
6OM6|1|1|U|1621
6OM6|1|1|G|1622

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34