J3_6OM7_030

3D structure

PDB id

6OM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAU*GCUUCUGGG*CACAAGG

Length

19 nucleotides

Bulged bases

6OM7|1|t|U|4946, 6OM7|1|t|U|4947, 6OM7|1|t|U|4949, 6OM7|1|t|A|5019

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OM7|1|t|C|4928
6OM7|1|t|A|4929
6OM7|1|t|U|4930
*
6OM7|1|t|G|4944
6OM7|1|t|C|4945
6OM7|1|t|U|4946
6OM7|1|t|U|4947
6OM7|1|t|C|4948
6OM7|1|t|U|4949
6OM7|1|t|G|4950
6OM7|1|t|G|4951
6OM7|1|t|G|4952
*
6OM7|1|t|C|5015
6OM7|1|t|A|5016
6OM7|1|t|C|5017
6OM7|1|t|A|5018
6OM7|1|t|A|5019
6OM7|1|t|G|5020
6OM7|1|t|G|5021

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain Q

60S ribosomal protein L17

Chain e

60S ribosomal protein L31