3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGC*GGACUGC*GAGGAAGGAG
Length
20 nucleotides
Bulged bases
6OPE|1|QA|A|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OPE_012 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.2877
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6OPE|1|QA|C|1116
6OPE|1|QA|G|1117
6OPE|1|QA|C|1118
*
6OPE|1|QA|G|1155
6OPE|1|QA|G|1156
6OPE|1|QA|A|1157
6OPE|1|QA|C|1158
6OPE|1|QA|U|1159
6OPE|1|QA|G|1160
6OPE|1|QA|C|1161
*
6OPE|1|QA|G|1175
6OPE|1|QA|A|1176
6OPE|1|QA|G|1177
6OPE|1|QA|G|1178
6OPE|1|QA|A|1179
6OPE|1|QA|A|1180
6OPE|1|QA|G|1181
6OPE|1|QA|G|1182
6OPE|1|QA|A|1183
6OPE|1|QA|G|1184

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QB
30S ribosomal protein S2
Chain QG
30S ribosomal protein S7
Chain QI
30S ribosomal protein S9
Chain QJ
30S ribosomal protein S10
Chain QN
30S ribosomal protein S14 type Z

Coloring options:


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