3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGUAAG*CGG*UCAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OPE_020 not in the Motif Atlas
Homologous match to J3_7RQB_007
Geometric discrepancy: 0.0919
The information below is about J3_7RQB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.3
Basepair signature
cWW-tSH-tHW-F-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

6OPE|1|RA|C|1298
6OPE|1|RA|G|1299
6OPE|1|RA|U|1300
6OPE|1|RA|A|1301
6OPE|1|RA|A|1302
6OPE|1|RA|G|1303
*
6OPE|1|RA|C|1625
6OPE|1|RA|G|1626
6OPE|1|RA|G|1627
*
6OPE|1|RA|U|1639
6OPE|1|RA|C|1640
6OPE|1|RA|A|1641
6OPE|1|RA|G|1642

Current chains

Chain RA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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