J3_6OPE_034

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OPE_034 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1248

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6OPE|1|XA|C|936
6OPE|1|XA|A|937
6OPE|1|XA|A|938
6OPE|1|XA|G|939
*
6OPE|1|XA|C|1344
6OPE|1|XA|U|1345
6OPE|1|XA|A|1346
6OPE|1|XA|G|1347
6OPE|1|XA|U|1348
6OPE|1|XA|A|1349
6OPE|1|XA|A|1350
*
6OPE|1|XA|U|1372
6OPE|1|XA|G|1373
6OPE|1|XA|A|1374
6OPE|1|XA|A|1375
6OPE|1|XA|U|1376
6OPE|1|XA|A|1377
6OPE|1|XA|C|1378
6OPE|1|XA|G|1379

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9