J3_6OPE_037

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OPE_037 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1891

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6OPE|1|XA|C|990
6OPE|1|XA|U|991
6OPE|1|XA|U|992
6OPE|1|XA|G|993
*
6OPE|1|XA|C|1045
6OPE|1|XA|A|1046
6OPE|1|XA|G|1047
*
6OPE|1|XA|C|1210
6OPE|1|XA|U|1211
6OPE|1|XA|U|1212
6OPE|1|XA|A|1213
6OPE|1|XA|C|1214
6OPE|1|XA|G|1215

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XN

30S ribosomal protein S14 type Z