J3_6OPE_064

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6OPE|1|RA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OPE_064 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0793

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6OPE|1|RA|C|297
6OPE|1|RA|G|298
6OPE|1|RA|A|299
6OPE|1|RA|A|300
6OPE|1|RA|G|301
*
6OPE|1|RA|C|316
6OPE|1|RA|G|317
6OPE|1|RA|C|318
6OPE|1|RA|C|319
6OPE|1|RA|A|320
6OPE|1|RA|G|321
6OPE|1|RA|A|322
6OPE|1|RA|G|323
6OPE|1|RA|A|324
6OPE|1|RA|G|325
*
6OPE|1|RA|C|337
6OPE|1|RA|G|338
6OPE|1|RA|U|339
6OPE|1|RA|A|340
6OPE|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24