J3_6OPE_071

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

6OPE|1|XA|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OPE_071 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.0938

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6OPE|1|XA|U|1073
6OPE|1|XA|G|1074
*
6OPE|1|XA|U|1083
6OPE|1|XA|G|1084
6OPE|1|XA|U|1085
6OPE|1|XA|U|1086
*
6OPE|1|XA|G|1099
6OPE|1|XA|C|1100
6OPE|1|XA|A|1101
6OPE|1|XA|A|1102

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XE

30S ribosomal protein S5