J3_6OPE_074

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

6OPE|1|YA|U|271|||C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OPE_074 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.1351

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6OPE|1|YA|U|269
6OPE|1|YA|A|270
6OPE|1|YA|A|270|||A
6OPE|1|YA|A|270|||B
6OPE|1|YA|C|270|||C
*
6OPE|1|YA|G|270|||W
6OPE|1|YA|G|270|||X
6OPE|1|YA|G|270|||Y
6OPE|1|YA|U|270|||Z
6OPE|1|YA|C|271|||A
6OPE|1|YA|G|271|||B
6OPE|1|YA|U|271|||C
6OPE|1|YA|G|271
*
6OPE|1|YA|C|366
6OPE|1|YA|G|370

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YI

50S ribosomal protein L9