J3_6ORD_021

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

6ORD|1|RA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ORD_021 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.0716

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6ORD|1|RA|G|1344
6ORD|1|RA|C|1345
6ORD|1|RA|G|1346
6ORD|1|RA|G|1347
6ORD|1|RA|G|1348
6ORD|1|RA|A|1349
6ORD|1|RA|C|1350
*
6ORD|1|RA|G|1381
6ORD|1|RA|G|1382
6ORD|1|RA|C|1383
6ORD|1|RA|A|1384
6ORD|1|RA|G|1385
*
6ORD|1|RA|C|1402
6ORD|1|RA|C|1403

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23