3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ORD_022 not in the Motif Atlas
Homologous match to J3_7RQB_010
Geometric discrepancy: 0.0641
The information below is about J3_7RQB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89368.3
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

6ORD|1|RA|U|2091
6ORD|1|RA|U|2092
6ORD|1|RA|G|2093
*
6ORD|1|RA|C|2196
6ORD|1|RA|U|2197
6ORD|1|RA|A|2198
6ORD|1|RA|A|2199
6ORD|1|RA|C|2200
*
6ORD|1|RA|G|2223
6ORD|1|RA|G|2224
6ORD|1|RA|A|2225
6ORD|1|RA|C|2226
6ORD|1|RA|A|2227
6ORD|1|RA|G|2228

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R1
50S ribosomal protein L28
Chain RD
50S ribosomal protein L2
Chain RI
50S ribosomal protein L9

Coloring options:


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