J3_6ORD_058

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ORD_058 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0686

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6ORD|1|QA|C|936
6ORD|1|QA|A|937
6ORD|1|QA|A|938
6ORD|1|QA|G|939
*
6ORD|1|QA|C|1344
6ORD|1|QA|U|1345
6ORD|1|QA|A|1346
6ORD|1|QA|G|1347
6ORD|1|QA|U|1348
6ORD|1|QA|A|1349
6ORD|1|QA|A|1350
*
6ORD|1|QA|U|1372
6ORD|1|QA|G|1373
6ORD|1|QA|A|1374
6ORD|1|QA|A|1375
6ORD|1|QA|U|1376
6ORD|1|QA|A|1377
6ORD|1|QA|C|1378
6ORD|1|QA|G|1379

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9