J3_6ORD_076

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6ORD|1|YA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ORD_076 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0627

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6ORD|1|YA|C|297
6ORD|1|YA|G|298
6ORD|1|YA|A|299
6ORD|1|YA|A|300
6ORD|1|YA|G|301
*
6ORD|1|YA|C|316
6ORD|1|YA|G|317
6ORD|1|YA|C|318
6ORD|1|YA|C|319
6ORD|1|YA|A|320
6ORD|1|YA|G|321
6ORD|1|YA|A|322
6ORD|1|YA|G|323
6ORD|1|YA|A|324
6ORD|1|YA|G|325
*
6ORD|1|YA|C|337
6ORD|1|YA|G|338
6ORD|1|YA|U|339
6ORD|1|YA|A|340
6ORD|1|YA|G|341

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YY

50S ribosomal protein L24