3D structure

PDB id
6ORL (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 pre-accommodated 70S complex at 24 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GC*GCGAAAAG*CC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ORL_001 not in the Motif Atlas
Homologous match to J3_7RQB_001
Geometric discrepancy: 0.1212
The information below is about J3_7RQB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_65070.3
Basepair signature
cWW-tWH-cWW-tSH-F-cWW-F
Number of instances in this motif group
4

Unit IDs

6ORL|1|1|G|30
6ORL|1|1|C|31
*
6ORL|1|1|G|474
6ORL|1|1|C|475
6ORL|1|1|G|476
6ORL|1|1|A|477
6ORL|1|1|A|478
6ORL|1|1|A|479
6ORL|1|1|A|480
6ORL|1|1|G|481
*
6ORL|1|1|C|509
6ORL|1|1|C|510

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain Q
50S ribosomal protein L20
Chain S
50S ribosomal protein L22
Chain U
50S ribosomal protein L24

Coloring options:


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