J3_6ORL_003

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6ORL|1|1|U|686, 6ORL|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ORL_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3414

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6ORL|1|1|U|683
6ORL|1|1|G|684
6ORL|1|1|A|685
6ORL|1|1|U|686
6ORL|1|1|C|687
6ORL|1|1|U|688
6ORL|1|1|A|689
*
6ORL|1|1|U|773
6ORL|1|1|G|774
6ORL|1|1|G|775
*
6ORL|1|1|C|791
6ORL|1|1|A|792
6ORL|1|1|A|793
6ORL|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34