J3_6ORL_023

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6ORL|1|2|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ORL_023 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1564

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6ORL|1|2|C|1237
6ORL|1|2|A|1238
6ORL|1|2|A|1239
6ORL|1|2|U|1240
6ORL|1|2|G|1241
*
6ORL|1|2|C|1296
6ORL|1|2|G|1297
6ORL|1|2|U|1298
6ORL|1|2|A|1299
6ORL|1|2|G|1300
6ORL|1|2|U|1301
6ORL|1|2|C|1302
6ORL|1|2|C|1303
*
6ORL|1|2|G|1334
6ORL|1|2|U|1335
6ORL|1|2|C|1336
6ORL|1|2|G|1337

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain r

30S ribosomal protein S13