3D structure

PDB id
6ORL (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 pre-accommodated 70S complex at 24 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
6ORL|1|1|U|34, 6ORL|1|1|U|448, 6ORL|1|1|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ORL_026 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.1158
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6ORL|1|1|C|32
6ORL|1|1|C|33
6ORL|1|1|U|34
6ORL|1|1|G|35
*
6ORL|1|1|C|445
6ORL|1|1|G|446
6ORL|1|1|A|447
6ORL|1|1|U|448
6ORL|1|1|A|449
6ORL|1|1|G|450
6ORL|1|1|U|451
6ORL|1|1|G|452
6ORL|1|1|A|453
6ORL|1|1|A|454
6ORL|1|1|C|455
6ORL|1|1|C|456
6ORL|1|1|A|457
6ORL|1|1|G|458
6ORL|1|1|U|459
6ORL|1|1|A|460
6ORL|1|1|C|461
*
6ORL|1|1|G|468
6ORL|1|1|G|469
6ORL|1|1|A|470
6ORL|1|1|A|471
6ORL|1|1|A|472
6ORL|1|1|G|473

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L4
Chain Q
50S ribosomal protein L20
Chain T
50S ribosomal protein L23
Chain d
50S ribosomal protein L34

Coloring options:


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