J3_6OSI_022

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6OSI|1|RA|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OSI_022 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1589

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6OSI|1|RA|C|2517
6OSI|1|RA|A|2518
6OSI|1|RA|U|2519
6OSI|1|RA|C|2520
*
6OSI|1|RA|G|2545
6OSI|1|RA|U|2546
6OSI|1|RA|U|2547
*
6OSI|1|RA|A|2561
6OSI|1|RA|U|2562
6OSI|1|RA|U|2563
6OSI|1|RA|A|2564
6OSI|1|RA|A|2565
6OSI|1|RA|A|2566
6OSI|1|RA|G|2567

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RN

50S ribosomal protein L13

Chain RO

50S ribosomal protein L14