3D structure

PDB id
6OT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF2 accommodated state bound Release complex 70S at 24 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
6OT3|1|1|U|2833, 6OT3|1|1|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OT3_011 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.176
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

6OT3|1|1|G|2812
6OT3|1|1|A|2813
6OT3|1|1|A|2814
6OT3|1|1|C|2815
*
6OT3|1|1|G|2831
6OT3|1|1|U|2832
6OT3|1|1|U|2833
6OT3|1|1|G|2834
6OT3|1|1|A|2835
6OT3|1|1|U|2836
*
6OT3|1|1|A|2882
6OT3|1|1|A|2883
6OT3|1|1|U|2884
6OT3|1|1|G|2885
6OT3|1|1|A|2886
6OT3|1|1|A|2887
6OT3|1|1|C|2888

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain N
50S ribosomal protein L17
Chain S
50S ribosomal protein L22
Chain b
50S ribosomal protein L32

Coloring options:


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