3D structure

PDB id
6OT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF2 accommodated state bound Release complex 70S at 24 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
6OT3|1|2|A|975, 6OT3|1|2|G|976, 6OT3|1|2|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OT3_018 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.1158
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6OT3|1|2|U|955
6OT3|1|2|U|956
6OT3|1|2|U|957
6OT3|1|2|A|958
6OT3|1|2|A|959
6OT3|1|2|U|960
6OT3|1|2|U|961
6OT3|1|2|C|962
*
6OT3|1|2|G|973
6OT3|1|2|A|974
6OT3|1|2|A|975
6OT3|1|2|G|976
6OT3|1|2|A|977
6OT3|1|2|A|978
6OT3|1|2|C|979
6OT3|1|2|C|980
6OT3|1|2|U|981
6OT3|1|2|U|982
6OT3|1|2|A|983
6OT3|1|2|C|984
*
6OT3|1|2|G|1221
6OT3|1|2|G|1222
6OT3|1|2|C|1223
6OT3|1|2|U|1224
6OT3|1|2|A|1225

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain A
Peptide chain release factor 2
Chain o
30S ribosomal protein S10
Chain r
30S ribosomal protein S13
Chain s
30S ribosomal protein S14
Chain x
30S ribosomal protein S19

Coloring options:


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