J3_6OT3_024

3D structure

PDB id

6OT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound Release complex 70S at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6OT3|1|2|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OT3_024 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1759

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

6OT3|1|2|C|1237
6OT3|1|2|A|1238
6OT3|1|2|A|1239
6OT3|1|2|U|1240
6OT3|1|2|G|1241
*
6OT3|1|2|C|1296
6OT3|1|2|G|1297
6OT3|1|2|U|1298
6OT3|1|2|A|1299
6OT3|1|2|G|1300
6OT3|1|2|U|1301
6OT3|1|2|C|1302
6OT3|1|2|C|1303
*
6OT3|1|2|G|1334
6OT3|1|2|U|1335
6OT3|1|2|C|1336
6OT3|1|2|G|1337

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain r

30S ribosomal protein S13