J3_6OTR_005

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OTR_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1141

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

6OTR|1|QA|C|936
6OTR|1|QA|A|937
6OTR|1|QA|A|938
6OTR|1|QA|G|939
*
6OTR|1|QA|C|1344
6OTR|1|QA|U|1345
6OTR|1|QA|A|1346
6OTR|1|QA|G|1347
6OTR|1|QA|U|1348
6OTR|1|QA|A|1349
6OTR|1|QA|A|1350
*
6OTR|1|QA|U|1372
6OTR|1|QA|G|1373
6OTR|1|QA|A|1374
6OTR|1|QA|A|1375
6OTR|1|QA|U|1376
6OTR|1|QA|A|1377
6OTR|1|QA|C|1378
6OTR|1|QA|G|1379

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9

Chain QW

Transfer RNA; tRNA