J3_6OTR_022

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

6OTR|1|RA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OTR_022 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.0914

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6OTR|1|RA|G|1344
6OTR|1|RA|C|1345
6OTR|1|RA|G|1346
6OTR|1|RA|G|1347
6OTR|1|RA|G|1348
6OTR|1|RA|A|1349
6OTR|1|RA|C|1350
*
6OTR|1|RA|G|1381
6OTR|1|RA|G|1382
6OTR|1|RA|C|1383
6OTR|1|RA|A|1384
6OTR|1|RA|G|1385
*
6OTR|1|RA|C|1402
6OTR|1|RA|C|1403

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RX

50S ribosomal protein L23