J3_6OTR_023

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OTR_023 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0871

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6OTR|1|RA|U|2091
6OTR|1|RA|U|2092
6OTR|1|RA|G|2093
*
6OTR|1|RA|C|2196
6OTR|1|RA|U|2197
6OTR|1|RA|A|2198
6OTR|1|RA|A|2199
6OTR|1|RA|C|2205
*
6OTR|1|RA|G|2219
6OTR|1|RA|G|2224
6OTR|1|RA|A|2225
6OTR|1|RA|C|2226
6OTR|1|RA|A|2227
6OTR|1|RA|G|2228

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RD

50S ribosomal protein L2

Chain RI

50S ribosomal protein L9